Computer Science

Computer Science ›› 2022, Vol. 49 ›› Issue (6A): 27-31.doi: 10.11896/jsjkx.210300129

• Smart Healthcare • Previous Articles     Next Articles

Visual Analysis of Multiple Probability Features of Bluetongue Virus Genome Sequence

CHEN Hui-pin1, WANG Kun1, YANG Heng2, ZHENG Zhi-jie1   

  1. 1 School of Software,Yunnan University,Kunming 650091,China
    2 Yunnan Tropical and Subtropical Animal Virus Diease Laboratory,Yunnan Animal Science and Veterinary Institute,Kunming 650224,China
  • Online:2022-06-10 Published:2022-06-08
  • About author:CHEN Hui-pin,born in 1999,bachelor.Her main research interests include computer biology science and cyber security.
    ZHENG Zhi-jie,born in 1956,Ph.D,professor.His main research interest is variant construction.
  • Supported by:
    National Natural Science Foundation of China(62041213).

PDF (PC)

444

Abstract: The sequence of a gene determines its structure,and the structure of a gene reflects biological functional traits.Therefore,scientific data visualization of viral gene sequences has become one of the widely used methods.There is an increasing demand for visual manipulation of biological gene sequences.Therefore,based on the most advanced bioinformatics analysis and hierarchical structured bioinformatics knowledge model,the method of multiple probability measures is proposed to statistically analyze the bluetongue virus gene sequence,and combined with computer visualization methods,the characteristics of the bluetongue virus under different projections are presented.Compared with traditional virus research methods,this method is intuitive and concise,and it is easy to use.This method provides rich visualization under different measurement coordinates,reflecting the classification characteristics of bluetongue virus.Results generated by this method are compared with the phylogenetic tree generated by traditional biological analysis methods,which could provide references for homology analysis and the study of the evolutionary relationship of bluetongue virus.It is conducive to in-depth study of bluetongue virus from various angles.

Key words: Bluetongue virus, Data visualization, Gene sequence, Probability statistics

CLC Number: 

  • TP391
[1] PATEL A,ROY P.The molecular biology of Bluetongue virus replication[J].Virus Research An International Journal of Molecular & Cellular Virology,2014,182:5-20.
[2] PRASAD B V,SCHMID M F.Principles of virus structural organization[J].Advances in Experimental Medicine and Biology,2012,726:17-47.
[3] RUSHTON J,LYONS N.Economic impact of Bluetongue:a review of the effects on production[J].Veterinaria Italiana,2015,51(4):401-406.
[4] PINIOR B,BRUGGER K,KÖFER J,et al.Economic comparison of the monitoring programmes for bluetongue vectors in Austria and Switzerland[J].The Veterinary Record,2015,176(18):464.
[5] PINIOR B,LEBL K,FIRTH C,et al.Cost analysis of bluetongue virus serotype 8 surveillance and vaccination programmes in Austria from 2005 to 2013[J].The Veterinary Journal,2015,206(2):154-160.
[6] GREWAR J D.The economic impact of Bluetongue and otherorbiviruses in sub-Saharan Africa,with special reference to Southern Africa[J].Veterinaria Italiana,2016,52(3/4):375-381.
[7] GETHMANN J,PROBST C,CONRATHS F J.Economic Impact of a Bluetongue Serotype 8 Epidemic in Germany[J].Frontiers in Veterinary Science,2020,7:65.
[8] MACLACHLAN N J,OSBURN B I.Impact of bluetongue virus infection on the international movement and trade of ruminants[J].J Am Vet Med Assoc,2006,228(9):1346-1349.
[9] HAMORI E,RUSKIN J.H curves,a novel method of representation of nucleotide series especially suited for long DNA sequences[J].Journal of Biological Chemistry,1983,258(2):1318-1327.
[10] JEFFREY H J.Chaos game representation of gene structure[J].Nucle-ic Acid Research,1990,18(8):2163-2170.
[11] HAO B L.Fractals fromgenomes-exact solutions of a biology-inspired problem[J].Physica A,2000,282:225-246.
[12] YANG Y L,WANG J H.Research on Z-curve of non-codingRNA[C]//Proceedings of the Eleventh Chinese Conference on Biophysics.2009:183-184.
[13] SUN C F,CHENG Z.Visual processing method of gene se-quence:China Patent,CN201610810914.3 [P].2017-04-19.
[14] JEFFREY Z,ZHU M H.Input-Output Types of Fifteen Mo-dules on Discrete and Real Measurements for COVID-19[M].EC Neurology Special Issue,2021(2):71-85.
[15] JEFFREY Z,LIU J Z.A Visual Framework of Meta Genomic Analysis on Variations of Whole SARS-CoV-2 Sequences[M].EC Neurology Special Issue,2021(2):49-70.
[16] TU F Y,HAN W J,WANG T,et al.A case of morphology and DNA molecular species of defeathered birds[J].Chinese Journal of Forensic Sciences,2020(5):108-110.
[17] GUO K.Complete Genome amplification of Astrovirus MLB2 in Patients Following Hematopoietic Stem Cell Transplantation and the Evo;utionary Study of the Astrovirus[D].Anhui:Anhui Medical University,2020.
[1] LUO Jing-jing, TANG Wei-zhen, DING Ji-ting. Research of ATC Simulator Training Values Independence Based on Pearson Correlation Coefficient and Study of Data Visualization Based on Factor Analysis [J]. Computer Science, 2021, 48(6A): 623-628.
[2] E Hai-hong, ZHANG Tian-yu, SONG Mei-na. Web-based Data Visualization Chart Rendering Optimization Method [J]. Computer Science, 2021, 48(3): 119-123.
[3] MA Meng-yu, WU Ye, CHEN Luo, WU Jiang-jiang, LI Jun, JING Ning. Display-oriented Data Visualization Technique for Large-scale Geographic Vector Data [J]. Computer Science, 2020, 47(9): 117-122.
[4] DU Liu-yun, ZHENG Zhi-jie, ZHENG Hua-xian. Visualization of DNA Sequences of Two Kinds of Bacteria Under Firmicutes [J]. Computer Science, 2020, 47(11A): 192-195.
[5] WANG Yang, LI Peng, JI Yi-mu, FAN Wei-bei, ZHANG Yu-jie, WANG Ru-chuan, CHEN Guo-liang. High Performance Computing and Astronomical Data:A Survey [J]. Computer Science, 2020, 47(1): 1-6.
[6] ZHENG Hong-bo, WU Bin, XU Fei, ZHANG Mei-yu, QIN Xu-jia. Visualization of Solid Waste Incineration Exhaust Emissions Based on Gaussian Diffusion Model [J]. Computer Science, 2019, 46(6A): 527-531.
[7] LI Yan, MA Jun-ming, AN Bo, CAO Dong-gang. Web Based Lightweight Tool for Big Data Processing and Visualization [J]. Computer Science, 2018, 45(9): 60-64.
[8] LI Hui, CHEN Hong-qian, DONG Shuang and MA Li-yi. Double Sunburst Matrix Visualization to Overview Majors Distributary Data [J]. Computer Science, 2017, 44(Z6): 455-458.
[9] TANG Ying, ZHONG Nan-jiang, SUN Kang-gao, QIN Da-kang and ZHOU Wei-hua. Clustering and Visualization of Social Network Based on User Interests [J]. Computer Science, 2017, 44(Z11): 385-390.
[10] ZHU Ya,SUN Dong-mei,HE Xiang and LIU Man-man. Short-term Wind Speed Prediction Based on EMD-GRNN Combination of Probability and Statistics [J]. Computer Science, 2014, 41(Z6): 72-75.
[11] SUN Yang, FENG Xiao-sheng ,TANG Jiu-yang, XIAO Wei-dong （School of Information System and Management, NUDT, Changsha 410073, China）. [J]. Computer Science, 2008, 35(11): 1-7.
[12] XI Jian-Qing GUO Yu-Bin TANG De-You （College of Computer Science and Engineering, South China University of Technology, Guangzhou 510640）. [J]. Computer Science, 2007, 34(1): 12-16.
Viewed
Full text


Abstract

Cited
  Shared   
  Discussed   
No Suggested Reading articles found!
渝ICP备16013121号-4
Add:18# Honghu West Rd., Yubei ,Chongqing,China    Post Code: 401121
Tel: 023-63500828/023-67039612/023-67039623
E-mail: jsjkx12@163.com
Powered by Beijing Magtech Co., Ltd.