计算机科学 ›› 2020, Vol. 47 ›› Issue (6A): 148-152.doi: 10.11896/JsJkx.190700046

• 计算机图形学 & 多媒体 • 上一篇    下一篇

深度学习在光声成像中的应用现状

孙正, 王新宇   

  1. 华北电力大学电子与通信工程系 河北 保定 071003
  • 发布日期:2020-07-07
  • 通讯作者: 孙正(sunzheng_tJu@163.com)
  • 基金资助:
    国家自然科学基金(61372042);中央高校基本科研业务费专项资金(2014ZD31)

Application of Deep Learning in Photoacoustic Imaging

SUN Zheng and WANG Xin-yu   

  1. Department of Electronic and Communication Engineering,North China Electric Power University,Baoding,Hebei 071003,China
  • Published:2020-07-07
  • About author:SUN Zheng, born in 1977, Ph.D, professor.Her main research interests include biomedical imaging and signal proces-sing.
  • Supported by:
    This work was supported by the National Natural Science Foundation of China (61372042) and Fundamental Research Funds for the Central Universities of Ministry of Education of China (2014AD31).

摘要: 光声成像(Photoacoustic Imaging,PAI)是一种多物理场耦合的无创生物医学功能成像技术,它将纯光学成像的高对比度与超声成像的高空间分辨率相结合,可同时获得生物组织的结构和功能成分信息。近年来,随着深度学习算法在医学图像处理中的广泛应用,基于深度学习的光声成像算法也成为该领域的研究热点。对深度学习在PAI图像重建中的应用现状进行综述,归纳和总结现有的算法,分析目前存在的问题,并展望未来可能的发展趋势。

关键词: 光声成像, 卷积神经网络, 深度学习, 图像重建, 有限角度扫描

Abstract: Photoacoustic imaging (PAI) is a multi-physics coupled non-invasive biomedical functional imaging technology.It combines the high contrast of pure optical imaging with the high spatial resolution of ultrasonic imaging,and can obtain the morpho-logy and functional components information of target tissues at the same time.In recent years,deep learning (DL) has been widely applied in medical image processing.The PAI imaging algorithms based on DL have attracted more and more attention of researchers.This paper reviewed the current application of DL in PAI image reconstruction,summarized the existing algorithms,analyzed their limits and forecasted the possible improvements in the future.

Key words: Convolutional neural network, Deep learning, Image reconstruction, Limited-angle scanning, Photoacoustic imaging

中图分类号: 

  • TP391.4
[1] YAO J,WANG LV.Recent progress in photoacoustic molecular imaging.Current Opinion in Chemical Biology,2018,45:104-112.
[2] POUDEL J,LOU Y,ANASTASIO M A.A survey of computational frameworks for solving the acoustic inverse problem in three-dimensional photoacoustic computed tomography.doi:10.1088/1361-6560/ab2017.
[3] BU S,YAMAKAWAY M,SHIINA T.Interpolation method for model-based 3-D planar photoacoustic tomography reconstruction//MBE,医用?生体工学研究会.2011:139-142.
[4] SYED TA,KRISHNAN VP,SIVASWAMY J.Numerical inversion of circular arc Radon transform.IEEE Transactions on Computational Imaging,2016,2(4):540-549.
[5] WANG J,WANG Y.An Efficient compensation method for limited-view photoacoustic imaging reconstruction based on Gerchberg-Papoulis extrapolation.Applied Sciences,2017,7(5):505.
[6] SUNNEGRDH J,DANIELSSON P E.Regularized iterative weighted filtered backproJection for helical cone-beam CT.Medical Physics,2008,35(9):4173-4185.
[7] ANTHOLZER S,SCHWAB J,BAUER-MARSCHALLINGER J,et al.NETT regularization for compressed sensing photoacoustic tomography//Proceedings of SPIE International Conference on Photons Plus Ultrasound:Imaging and Sensing 2019.2019:108783B.
[8] SYED T A,KRISHNAN V P,SIVASWAMY J.Numerical inversion of circular arc radon transform .IEEE Transactions on Computational Imaging,2017,2(4):540-549.
[9] GUO W.Research on Reconstruction Algorithms of CT with Incomplete ProJection Data .Changshun:Jilin University,2011.
[10] SU B L,ZHANG Y H,PENG L H,et al.Simultaneous iterative reconstruction technique for electrical capacitance tomography .Journal of Tsinghua University(Science and Technology),2000(9):90-92.
[11] CHEN X,HU H L,GAO X X,et al.Comparison of Algebraic Reconstruction Technique and Simultaneous Iterative Reconstruction Technique in Electrical Capacitance Tomography Image Reconstruction .Journal of Xi’an Jiaotong University,2011,45(4):25-29.
[12] YANG D W,XING D,ZHAO X,et al.A combined reconstruction algorithm for limited-view multi-element photoacoustic imaging .Chinese Physics Letters,2010,27(5):144-147.
[13] CHAUDHARY G,ROUMELIOTIS M,CARSON J J L,et al.Comparison of reconstruction algorithms for sparse-array detection photo-acoustic tomography //Proceedings of SPIE International Conference on Photons Plus Ultrasound:Imaging and Sensing.2010,7564:756434.
[14] WANG Q,WU Y N.New Analytical Solution to Extrapolation Problem for Band-Limited Signals .Journal of Electronics and Information Technology,1999,21(6):825-828.
[15] LIU X Y,PENG D,GUO W,et al.Compressed sensing photoacoustic imaging based on fast alternating direction algorithm .International Journal of Biomedical Imaging,2012,2012:206-214.
[16] VASWANI N,LU W.Modified-CS:modifying compressive sensing for problems with partially known support .IEEE Transactions on Signal Processing,2010,58(9):4595-4607.
[17] MENG J,WANG LV,YING L,et al.Compressed-sensing photoacoustic computed tomography in vivo with partially known support .Medical & Biological Imaging.2012,20(15):16510-16523.
[18] LIANG D,ZHANG H F,YING L.Compressed-sensing photoacoustic imaging based on random optical illumination .International Journal of Functional Informatics & Personalised Medicine,2009,2(4):394-406.
[19] ARRIDGE S,BEARD P,BETCKE M,et al.Accelerated high-resolution photoacoustic tomography via compressed sensing .Physics in Medicine & Biology,2016,61(24):8908.
[20] MENG J,JIANG Z,WANG LV,et al.High-speed,sparse-sampling three-dimensional photoacoustic computed tomography in vivo based on principal component analysis.Journal of Biomedical Lptics,2016,21(7):076007.
[21] LITJENS G,KOOI T,BEJNORDI B E,et al.A survey on deep learning in medical image analysis.Medical Image Analysis,2017,42(9):60-88.
[22] WANG G,YE J C,MUELLER K,et al.Image reconstruction is a new frontier of machine learning.IEEE Transactions on Medical Imaging,2018,37(6):1289-1296.
[23] LUCAS A,ILIADIS M,MOLINA R,et al.Using deep neural networks for inverse problems in imaging:beyond analytical methods.IEEE Signal Processing Magazine,2018,35(1):20-36.
[24] HALTMEIER M,ANTHOLZER S,SCHWAB J,et al.Photoacoustic image reconstruction via deep learning//Proceedings of SPIE International Conference on Photons Plus Ultrasound:Imaging and Sensing 2018.2018:104944U.
[25] KELLY B,MATTHEWS T P,ANASTASIO M A.Deep lear-ning-guided image reconstruction from incomplete data//Proceedings of 31st Annual Conference on Neural Information Processing Systems (NIPS 2017).Long Beach,CA,USA,2017.
[26] HAUPTMANN A,LUCKA F,BETCKE M,et al.Model based learning for accelerated,limited-view 3D photoacoustic tomography.IEEE Transactions on Medical Imaging,2018,37(6):1382-1393.
[27] HALTMEIER M,ANTHOLZER S,SCHWAB J,et al.Photoacoustic image reconstruction via deep learning//Proceedings of SPIE International Conference on Photons Plus Ultrasound:Imaging and Sensing 2018.2018:104944U.
[28] SCHWAB J,ANTHOLZER S,NUSTER R,et al.Real-time photoacoustic proJection imaging using deep learning.arXiv:1801.06693,2018.
[29] SCHWAB J,ANTHOLZER S,HALTMEIER M.Learned backproJection for sparse and limited view photoacoustic tomography//Proceedings of SPIE International Conference on Photons Plus Ultrasound:Imaging and Sensing 2019.2019:1087837
[30] SUN Z,HAN D,YUAN Y.2-D image reconstruction of photoacoustic endoscopic imaging based on time-reversal.Compu-ters in Biology and Medicine,2016,76:60-68.
[31] WAIBEL D J E.Photoacoustic image reconstruction to solve the acoustic inverse problem with deep learning.University of Heidelberg,2018.
[32] WAIBEL D,GRHL J,ISENSEE F,et al.Reconstruction of ini-tial pressure from limited view photoacoustic images using deep learning//Proceedings of SPIE International Conference on Photons Plus Ultrasound:Imaging and Sensing 2018.2018:104942S.
[33] SCHWAB J,ANTHOLZER S,NUSTER R,et al.DALnet: high-resolution photoacoustic proJection imaging using deep learning.arXiv:1801.06693,2018.
[34] ANTHOLZER S,HALTMEIER M,SCHWAB J.Deep learning for photoacoustic tomography from sparse data.Inverse Problems in Science and Engineering,2018,27(6):1-19.
[35] SCHWAB J,ANTHOLZER S,HALTMEIER M.Deep null space learning for inverse problems:Convergence analysis and rates.arXiv:1806.06137,2018.
[36] ANTHOLZER S,SCHWAB J,HALTMEIER M.Deep learning versus l1-minimization for compressed sensing photoacoustic tomography.arXiv:1901.06510,2019.
[37] AWASTHI N,PRABHAKAR K R,KALVA S K,et al.PAFuse:deep supervised approach for the fusion of photoacoustic images with distinct reconstruction characteristics.Biomedi-cal Optics Express,2019,10(5):2227-2243.
[38] ADLER J,KTEM O.Solving ill-posed inverse problems using iterative deep neural networks.Inverse Problems,2017,33(12):124007.
[39] LI H,SCHWAB J,ANTHOLZER S,et al.NETT_solving inverse problems with deep neural networks.arXiv:1803.00092,2018.
[40] ARRIDGE S,BEARD P,BETCKE M,et al.Accelerated high-resolution photoacoustic tomography via compressed sensing.Physics in Medicine and Biology,2016,61(24):8908-8940.
[41] SCHWAB J,ANTHOLZER S,HALTMEIER M.Big in Japan:regularizing networks for solving inverse problems.arXiv:1812.00965,2018.
[42] ANTHOLZER S,SCHWAB J,MARSCHALLINGER J B,et al.NETT regularization for compressed sensing photoacoustic tomography.arXiv:1901.11158v1,2019.
[43] SCHWAB J,ANTHOLZER S,NUSTER R,et al.Deep learning of truncated singular values for limited view photoacoustic tomography//Proceedings of SPIE International Conference on Photons Plus Ultrasound:Imaging and Sensing 2019.2019:1087836.
[44] ANDRYCHOWICZ M,DENIL M,GOMEZ S,et al.Learning to learn by gradient descent by gradient descent//Proceedings of 30th Annual Conference on Neural Information Processing Systems 2016 (NIPS2016).Barcelona,Spain,2016:3981-3989.
[45] HAUPTMANN A,COX B,LUCKA F,et al.Approximate kspace models and deep learning for fast photoacoustic reconstruction//Machine Learning for Medical Image Reconstruction (MLMIR 2018).Lecture Notes in Computer Science.Cham:Springer,2018:103-111.
[46] SUN Z,ZHENG L.Progress in Quantitative photoacoustictomography.Chinese Journal of Luminescence,2017,38(9):1222-1232.
[47] JIN H,ZHANG R,LIU S,et al.A single sensor dual-modality photoacoustic fusion imaging for compensation of light fluence variation.IEEE Transactions on Biomedical Engineering,2019,66(6):1810-1813.
[48] CAI C,DENG K,MA C,et al.End-to-end deep neural network for optical inversion in quantitative photoacoustic imaging.Optics Letters,2018,43(12):2752-2755.
[49] KIRCHNER T,GRHL J,MAIER-HEIN L.Context encoding enables machine learning-based quantitative photoacoustics.Journal of Biomedical Optics,2018,23(5):056008.
[50] GRHL J,KIRCHNER T,ADLER T,et al.Confidence estimation for machine learning-based quantitative photoacoustics.Journal of Imaging,2018,4:147.
[51] TREEBY B E,COX B T.k-Wave:MATLAB toolbox for the simulation and reconstruction of photoacoustic wave fields.Journal of Biomedical Optics,2010,15(2):1-12.
[52] JACQUES S L.Coupling 3D Monte Carlo light transport in optically heterogeneous tissues to photoacoustic signal generation.Photoacoustics,2014,2(4):137-142.
[53] SUN Z,YUAN Y,HAN D.A computer-based simulator for intravascular photoacoustic images.Computers in biology and medicine,2017,81:176-187.
[1] 周乐员, 张剑华, 袁甜甜, 陈胜勇.
多层注意力机制融合的序列到序列中国连续手语识别和翻译
Sequence-to-Sequence Chinese Continuous Sign Language Recognition and Translation with Multi- layer Attention Mechanism Fusion
计算机科学, 2022, 49(9): 155-161. https://doi.org/10.11896/jsjkx.210800026
[2] 徐涌鑫, 赵俊峰, 王亚沙, 谢冰, 杨恺.
时序知识图谱表示学习
Temporal Knowledge Graph Representation Learning
计算机科学, 2022, 49(9): 162-171. https://doi.org/10.11896/jsjkx.220500204
[3] 饶志双, 贾真, 张凡, 李天瑞.
基于Key-Value关联记忆网络的知识图谱问答方法
Key-Value Relational Memory Networks for Question Answering over Knowledge Graph
计算机科学, 2022, 49(9): 202-207. https://doi.org/10.11896/jsjkx.220300277
[4] 汤凌韬, 王迪, 张鲁飞, 刘盛云.
基于安全多方计算和差分隐私的联邦学习方案
Federated Learning Scheme Based on Secure Multi-party Computation and Differential Privacy
计算机科学, 2022, 49(9): 297-305. https://doi.org/10.11896/jsjkx.210800108
[5] 李宗民, 张玉鹏, 刘玉杰, 李华.
基于可变形图卷积的点云表征学习
Deformable Graph Convolutional Networks Based Point Cloud Representation Learning
计算机科学, 2022, 49(8): 273-278. https://doi.org/10.11896/jsjkx.210900023
[6] 王剑, 彭雨琦, 赵宇斐, 杨健.
基于深度学习的社交网络舆情信息抽取方法综述
Survey of Social Network Public Opinion Information Extraction Based on Deep Learning
计算机科学, 2022, 49(8): 279-293. https://doi.org/10.11896/jsjkx.220300099
[7] 郝志荣, 陈龙, 黄嘉成.
面向文本分类的类别区分式通用对抗攻击方法
Class Discriminative Universal Adversarial Attack for Text Classification
计算机科学, 2022, 49(8): 323-329. https://doi.org/10.11896/jsjkx.220200077
[8] 姜梦函, 李邵梅, 郑洪浩, 张建朋.
基于改进位置编码的谣言检测模型
Rumor Detection Model Based on Improved Position Embedding
计算机科学, 2022, 49(8): 330-335. https://doi.org/10.11896/jsjkx.210600046
[9] 陈泳全, 姜瑛.
基于卷积神经网络的APP用户行为分析方法
Analysis Method of APP User Behavior Based on Convolutional Neural Network
计算机科学, 2022, 49(8): 78-85. https://doi.org/10.11896/jsjkx.210700121
[10] 朱承璋, 黄嘉儿, 肖亚龙, 王晗, 邹北骥.
基于注意力机制的医学影像深度哈希检索算法
Deep Hash Retrieval Algorithm for Medical Images Based on Attention Mechanism
计算机科学, 2022, 49(8): 113-119. https://doi.org/10.11896/jsjkx.210700153
[11] 孙奇, 吉根林, 张杰.
基于非局部注意力生成对抗网络的视频异常事件检测方法
Non-local Attention Based Generative Adversarial Network for Video Abnormal Event Detection
计算机科学, 2022, 49(8): 172-177. https://doi.org/10.11896/jsjkx.210600061
[12] 檀莹莹, 王俊丽, 张超波.
基于图卷积神经网络的文本分类方法研究综述
Review of Text Classification Methods Based on Graph Convolutional Network
计算机科学, 2022, 49(8): 205-216. https://doi.org/10.11896/jsjkx.210800064
[13] 胡艳羽, 赵龙, 董祥军.
一种用于癌症分类的两阶段深度特征选择提取算法
Two-stage Deep Feature Selection Extraction Algorithm for Cancer Classification
计算机科学, 2022, 49(7): 73-78. https://doi.org/10.11896/jsjkx.210500092
[14] 张颖涛, 张杰, 张睿, 张文强.
全局信息引导的真实图像风格迁移
Photorealistic Style Transfer Guided by Global Information
计算机科学, 2022, 49(7): 100-105. https://doi.org/10.11896/jsjkx.210600036
[15] 戴朝霞, 李锦欣, 张向东, 徐旭, 梅林, 张亮.
基于DNGAN的磁共振图像超分辨率重建算法
Super-resolution Reconstruction of MRI Based on DNGAN
计算机科学, 2022, 49(7): 113-119. https://doi.org/10.11896/jsjkx.210600105
Viewed
Full text


Abstract

Cited

  Shared   
  Discussed   
No Suggested Reading articles found!