计算机科学 ›› 2022, Vol. 49 ›› Issue (6A): 27-31.doi: 10.11896/jsjkx.210300129
陈慧嫔1, 王琨1, 杨恒2, 郑智捷1
CHEN Hui-pin1, WANG Kun1, YANG Heng2, ZHENG Zhi-jie1
摘要： 由于基因序列决定基因结构,基因结构反应生物功能性状,对病毒基因序列进行科学的数据可视化成为广泛应用的方法之一,对生物的基因序列进行可视化操作的需求日益增加。由此提出以最先进的生物信息分析学和分层结构化生物信息知识模型为基础,采用多元概率测度的方式对蓝舌病毒基因序列进行统计分析,结合计算机可视化的方法呈现蓝舌病毒在不同投影下的特征。与传统的病毒研究方法相比,此方法直观简洁,应用难度小。在不同的测量坐标下提供丰富的可视化呈现可反映蓝舌病毒的分类特征,将所提方法生成的结果与传统生物分析方法生成的系统发育树结果进行对照,可为同源性分析以及蓝舌病毒进化关系的研究提供参考,利于从多种角度深入研究蓝舌病毒。
中图分类号:
| [1] PATEL A,ROY P.The molecular biology of Bluetongue virus replication[J].Virus Research An International Journal of Molecular & Cellular Virology,2014,182:5-20. [2] PRASAD B V,SCHMID M F.Principles of virus structural organization[J].Advances in Experimental Medicine and Biology,2012,726:17-47. [3] RUSHTON J,LYONS N.Economic impact of Bluetongue:a review of the effects on production[J].Veterinaria Italiana,2015,51(4):401-406. [4] PINIOR B,BRUGGER K,KÖFER J,et al.Economic comparison of the monitoring programmes for bluetongue vectors in Austria and Switzerland[J].The Veterinary Record,2015,176(18):464. [5] PINIOR B,LEBL K,FIRTH C,et al.Cost analysis of bluetongue virus serotype 8 surveillance and vaccination programmes in Austria from 2005 to 2013[J].The Veterinary Journal,2015,206(2):154-160. [6] GREWAR J D.The economic impact of Bluetongue and otherorbiviruses in sub-Saharan Africa,with special reference to Southern Africa[J].Veterinaria Italiana,2016,52(3/4):375-381. [7] GETHMANN J,PROBST C,CONRATHS F J.Economic Impact of a Bluetongue Serotype 8 Epidemic in Germany[J].Frontiers in Veterinary Science,2020,7:65. [8] MACLACHLAN N J,OSBURN B I.Impact of bluetongue virus infection on the international movement and trade of ruminants[J].J Am Vet Med Assoc,2006,228(9):1346-1349. [9] HAMORI E,RUSKIN J.H curves,a novel method of representation of nucleotide series especially suited for long DNA sequences[J].Journal of Biological Chemistry,1983,258(2):1318-1327. [10] JEFFREY H J.Chaos game representation of gene structure[J].Nucle-ic Acid Research,1990,18(8):2163-2170. [11] HAO B L.Fractals fromgenomes-exact solutions of a biology-inspired problem[J].Physica A,2000,282:225-246. [12] YANG Y L,WANG J H.Research on Z-curve of non-codingRNA[C]//Proceedings of the Eleventh Chinese Conference on Biophysics.2009:183-184. [13] SUN C F,CHENG Z.Visual processing method of gene se-quence:China Patent,CN201610810914.3 [P].2017-04-19. [14] JEFFREY Z,ZHU M H.Input-Output Types of Fifteen Mo-dules on Discrete and Real Measurements for COVID-19[M].EC Neurology Special Issue,2021(2):71-85. [15] JEFFREY Z,LIU J Z.A Visual Framework of Meta Genomic Analysis on Variations of Whole SARS-CoV-2 Sequences[M].EC Neurology Special Issue,2021(2):49-70. [16] TU F Y,HAN W J,WANG T,et al.A case of morphology and DNA molecular species of defeathered birds[J].Chinese Journal of Forensic Sciences,2020(5):108-110. [17] GUO K.Complete Genome amplification of Astrovirus MLB2 in Patients Following Hematopoietic Stem Cell Transplantation and the Evo;utionary Study of the Astrovirus[D].Anhui:Anhui Medical University,2020. |
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