Computer Science ›› 2021, Vol. 48 ›› Issue (11): 287-293.doi: 10.11896/jsjkx.201200016

• Artificial Intelligence • Previous Articles     Next Articles

Joint Extraction Method for Chinese Medical Events

YU Jie1, JI Bin1, LIU Lei2, LI Sha-sha1, MA Jun1, LIU Hui-jun1   

  1. 1 College of Computer,National University of Defense Technology,Changsha 410073,China
    2 Institute of Logistics Science and Technology,Academy of Military Sciences,Beijing 100091,China
  • Received:2020-12-02 Revised:2021-03-11 Online:2021-11-15 Published:2021-11-10
  • About author:YU Jie,born in 1982,Ph.D,research fellow,master supervisor,is a member of China Computer Federation.His main research interests include operating system,artificial intelligence and natural language processing.
    LIU Hui-jun,born in 1993,Ph.D.Her main research interests include natural language processing and text against attack and defense.
  • Supported by:
    National Natural Science Foundation of China(61532001).

Abstract: The popularization of electronic clinical medical records (EMRs) makes it possible to use automated ways to quickly extract high-value information from EMRs.As a kind of crucial medical information,tumor medical event is typically composed of a series of attributes describing malignant tumors.Recently,tumor medical event extraction has become a research hotspot in the academic community,and many influential academic conferences publish it as an evaluation task and provide a series of high-quality manually annotated data.Aiming at the discrete characteristic of tumor event attributes,this paper proposes a joint extraction method,which realizes the joint extraction of tumor primary site and primary tumor size and also the extraction of tumor metastasis sites.In addition,aiming to alleviate the small counts and types of annotated tumor medical texts,this paper proposes a pseudo-data generation algorithm based on the global random replacement of key information,which improves the transfer learning ability of the joint extraction method for different types of tumor events.The proposed method wins the third place in the clinical medical event extraction evaluation task of CCKS2020,and extensive experiments on CCKS2019 and CCKS2020 datasets verify the effectiveness of the proposed method.

Key words: Chinese electronic medical record, Joint extraction, Medical event extraction, Transfer learning, Tumor event

CLC Number: 

  • TP391
[1]TANG B Z,WANG X L,YAN J,et al.Entity recognition inChinese clinical text using attention-based CNN-LSTM-CRF[J].BMC Medical Informatics and Decision Making,2019,19(S3):74.
[2]Extraction of clinical medical entities and attributes from Chinese electronic medical records [EB/OL].[2020-11-28].http://icrc.hitsz.edu.cn/chip2018/task.html.
[3]Named entity recognition for Chinese electronic medical records [EB/OL].[2020-11-28].http://www.ccks2019.cn/?page_id=62.
[4]Medical entity and event extraction for Chinese electronic medical records[EB/OL].[2020-11-28].http://sigkg.cn/ccks2020/?page_id=69.
[5]JI B,LI S S,YU J,et al.Research on Chinese medical named entity recognition based on collaborative cooperation of multiple neural network models[J].Journal of Biomedical Informatics,2020,104:103395.
[6]LYU J N,XING C Y,LI L.Video Character Relation Extraction Based on Multi-feature Fusion and Fine-granularity Analysis[J].Computer Science,2021,48(4):117-122.
[7]DING L,XIANG Y.Chinese Event Detection with Hierarchical and Multi-granularity Semantic Fusion[J].Computer Science,2021,48(5):202-208.
[8]ZHANG D,CHEN W L.Chinese Named Entity RecognitionBased on Contextualized Char Embeddings[J].Computer Science,2021,48(3):233-238.
[9]ZHOU X J,XU C M,RUAN T.Multi-granularity Medical Entity Recognition for Chinese Electronic Medical Records[J].Computer Science,2021,48(4):237-242.
[10]SUN X,SUN C Y,REN F J.Biomedical named entity recognition based on deep conditional random fields[J].Pattern Recognition and Artificial Intelligence,2016,29(11):997-1008.
[11]DONG X S,QIAN L J,GUAN Y.A multiclass classificationmethod based on deep learning for named entity recognition in electronic medical record[C]//Proceedings of the International 2016 New York Scientific Data Summit (NYSDS).2016.
[12]WANG X,YANG C,GUAN R.A comparative study for biomedical named entity recognition[J].International Journal of Machine Learning & Cybernetics,2018,9(3):373-382.
[13]YU N,WANG P,WENG Z,et al.Named entity recognition in Chinese electronic medical records based on multi-feature integration[J].Beijing Biomedical Engineering,2018,37(3):279-284.
[14]TANG B,CAO H,WANG X.Evaluating word representation features in biomedical named entity recognition tasks[J].Bio-Med Research International,2014:240403.
[15]CHANG F,GUO J,XU W.Application of word embeddings in biomedical named entity recognition tasks[J].Digital Inf. Ma-nage,2015,13(5):321-327.
[16]YAO L,LIU H,LIU Y.Biomedical named entity recognitionbased on deep natural network[J].International Journal of Hybrid Information Technology,2015,8(8):279-288.
[17]LI L,JIN L,JIANG Y.Recognizing biomedical named entities based on sentence vector/twin word embeddings conditioned bidirectional LSTM[C]//Proceedings of China National Confe-rence on Chinese Computational Linguistics.Springer International Publishing,2016:165-176.
[18]LI L S,GUO Y K.Biomedical named entity recognition with CNN-BLSTM-CRF[J].Journal of Chinese Information Proces-sing,2018,32(1):116-122.
[19]LIANG Z,CHEN J,XU Z,et al.A Pattern-Based Method for Medical Entity Recognition From Chinese Diagnostic Imaging Text[J].Frontiers in Artificial Intelligence,2019,2:1-8.
[20]ZHAO G,ZHANG T,WANG C Y,et al.Team MSIIP at CCKS 2019 Task 2 [EB/OL].[2020-11-11].https://conference.bj.bcebos.com/ccks2019/eval/webpage/pdfs/eval_paper_1_2_2.pdf.
[21]SONG Y W,LUO L,LI N,et al.NER-PS-MS:Medical Attri-bute Extraction based on Medical Named Entity Recognition [EB/OL].[2020-11-09].https://conference.bj.bcebos.com/ccks2019/eval/webpage/pdfs/eval_paper_1_2_3.pdf.
[22]DAI S T,WANG Q,HUANG P P,et al.Small sample medical event extraction based on pre-trained language model.[EB/OL].[2020-11-28].CCKS2020 evaluation paper,https://bj.bcebos.com/v1/conference/ccks2020/eval_paper/ccks2020_eval_paper_3_2_1.pdf.
[23]ZHANG X N,ZHAO X Y,GE S,et al.ccks2020 medical event extraction based on named entity recognition [EB/OL].[2020-11-28].CCKS2020 evaluation paper,https://bj.bcebos.com/v1/conference/ccks2020/eval_paper/ccks2020_eval_paper_3_2_2.pdf.
[24]JI B,LIU R,LI S S,et al.A hybrid approach for named entity recognition in Chinese electronic medical record[J].BMC Medical Informatics and Decision Making,2019,19(S2):64.
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